YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNTNLQAMI ESAILAAFAM VIDILPLSIK LPTGGSISFA MIPIFIIAYR WGFKSAFLGG  60
   61 LVWGLLQIVV GDAYILTPVQ AFIEYFIAFA FIGFAGLFYR PIQKALLTSN ENNLEQSNLD 120
  121 SRKDKASSKQ NEGKKVLGYI ILATFIGSFA RYFCHFIAGI IFWGQYAPKG QSAVLYSLIV 180
  181 NGSTMIGSYI LCTVLLIFLF LTSPRLFKSI NAYQINANKK GA

Type	Start	End	Confidence
Cytoplasmic	1	7	0.63
Transmembrane Helix	8	27	0.83
Non-Cytoplasmic	28	32	0.47
Transmembrane Helix	33	53	0.74
Cytoplasmic	54	55	0.66
Transmembrane Helix	56	76	0.80
Non-Cytoplasmic	77	80	0.80
Transmembrane Helix	81	99	0.93
Cytoplasmic	100	135	0.94
Transmembrane Helix	136	159	0.86
Non-Cytoplasmic	160	178	0.80
Transmembrane Helix	179	202	0.86
Cytoplasmic	203	222	0.94