YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259540, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.57
Transmembrane Helix	7	35	0.73
Cytoplasmic	36	54	0.50
Transmembrane Helix	55	74	0.58
Non-Cytoplasmic	75	81	0.69
Transmembrane Helix	82	103	0.87
Cytoplasmic	104	119	0.92
Transmembrane Helix	120	142	0.91
Non-Cytoplasmic	143	161	0.91
Transmembrane Helix	162	184	0.93
Cytoplasmic	185	196	0.92
Transmembrane Helix	197	217	0.91
Non-Cytoplasmic	218	228	0.87
Transmembrane Helix	229	250	0.91
Cytoplasmic	251	256	0.82
Transmembrane Helix	257	278	0.92
Non-Cytoplasmic	279	303	0.93
Transmembrane Helix	304	325	0.92
Cytoplasmic	326	342	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDMLAIIW FGLWGVIWTV YFILDGYALG NGMIFPFVTK DRQEQNQLQE AIGPFWGGNE  60
   61 VWLITAGGAT FAAFPVTYAN MFSYLYTPLF LVLLALFARA AGLEFMHKDD SPIWQKTCKW 120
  121 AFAIGSFLIA FLFGVTFANL YYGLQIGKNG YEGNLLSLLN HYGILGGLFF TAIFVVSGAL 180
  181 WVMIKTTGEV SDRAYKIARP FSMAAAIILA IFYVATANRT NLFQNFTEYP VLFILPVLAM 240
  241 LMSVLALIMV YKHKIGLAFT FVCLTIAMFM TTGFAGMFPR MLPSRINDAY STTLYNAAGS 300
  301 QLNLKIMFFV AMVMVPIVIG YQLWSYSIFK NKIHKDSAKG YH