YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259539, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.94
Transmembrane Helix	15	36	0.92
Cytoplasmic	37	53	0.92
Transmembrane Helix	54	75	0.90
Non-Cytoplasmic	76	95	0.87
Transmembrane Helix	96	117	0.93
Cytoplasmic	118	126	0.93
Transmembrane Helix	127	147	0.95
Non-Cytoplasmic	148	181	0.94
Transmembrane Helix	182	206	0.87
Cytoplasmic	207	217	0.93
Transmembrane Helix	218	237	0.93
Non-Cytoplasmic	238	321	0.97
Transmembrane Helix	322	341	0.95
Cytoplasmic	342	356	0.87
Transmembrane Helix	357	376	0.94
Non-Cytoplasmic	377	402	0.93
Transmembrane Helix	403	425	0.90
Cytoplasmic	426	449	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVLLLSRF QFAITIFYHF LFVPLTIGLV ILVACMETQY ARTLNPTYRK MANFWGKLFT  60
   61 INFVMGIITG ITMEFQFGTN WSEYSKYMGD IFGSPLAIEA LVAFFLESTF MGIWLFGKDK 120
  121 ISPKFRAFCM WMVALGTNIS ALWIITANGF MQNPVGYVVR NGRAELNDFW ALVTNPYAWN 180
  181 MFFHTVIGCY IVGAFFVMAI SAYHLLRKNE VEFFKKSFKF GLMLGLFAAT ITPFIGHQSG 240
  241 VSAAKYQPAK GAAMEAVWET GKGQGFSIVQ IPDVKNEKNF EFLTIPKLGS FFYTNSFDGE 300
  301 IVGLKDIPKE DRPNVNLVYY SFRLMVALGM FFMALTWYGF YLNRKGKLEN SKRYLKITIW 360
  361 SVLLPYIAIN AGWIVAEVGR QPWTVYKLMR TAESVSPISV PQIWFSLISL ILFYTLLLIA 420
  421 DVYLMLKFAK KGPAALEEPA TKGGVAHVS