YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259485, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.58
Transmembrane Helix	11	45	0.70
Non-Cytoplasmic	46	59	0.78
Transmembrane Helix	60	78	0.92
Cytoplasmic	79	91	0.78
Transmembrane Helix	92	113	0.92
Non-Cytoplasmic	114	120	0.77
Transmembrane Helix	121	141	0.95
Cytoplasmic	142	152	0.92
Transmembrane Helix	153	176	0.86
Non-Cytoplasmic	177	182	0.69
Transmembrane Helix	183	204	0.92
Cytoplasmic	205	213	0.91
Transmembrane Helix	214	235	0.86
Non-Cytoplasmic	236	240	0.70
Transmembrane Helix	241	259	0.83
Cytoplasmic	260	268	0.80
Transmembrane Helix	269	288	0.82
Non-Cytoplasmic	289	295	0.67
Transmembrane Helix	296	319	0.87
Cytoplasmic	320	334	0.80
Transmembrane Helix	335	359	0.76
Non-Cytoplasmic	360	361	0.47
Transmembrane Helix	362	378	0.74
Cytoplasmic	379	393	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLIFEVGT ALVLVAFAAI LAAKLKFSII PFLIILGMLV GPHAPDLGLI DLRFIESGEV  60
   61 ISFLGRVGVI FLLFYLGLEF SIKKLIKSGK SIAFGGTVHI SLNFLLGLLY GYVMGFPLLE 120
  121 TLIIAGIITI SSSAIVAKVI VDLRRSGNKE TELILGIIMF DDIFLAVYLS VVSGLVLGGA 180
  181 TSFAGALTSV LIAVGYMLLF FVIARKATPF LNKVLDISSN EIFIIVIFAI LFFVAGFSET 240
  241 IHVAEAIGAL LLGLVFSETE HSDRIEKLVV PFRDFFGAIF FFSFGLSIDP FSLGGAVWLA 300
  301 LGAVFITIIG NFTAGMIAGS KAGLSHKAST NIGLTLVSRG EFSIIVANIG IAGGLMAAIK 360
  361 PFSALYVLIL ASLGPLLTKE SGRIYSLLDK LFK