YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264802, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	35	0.92
Non-Cytoplasmic	36	42	0.85
Transmembrane Helix	43	65	0.91
Cytoplasmic	66	82	0.94
Transmembrane Helix	83	104	0.91
Non-Cytoplasmic	105	112	0.76
Transmembrane Helix	113	136	0.89
Cytoplasmic	137	141	0.88
Transmembrane Helix	142	165	0.89
Non-Cytoplasmic	166	186	0.89
Transmembrane Helix	187	208	0.87
Cytoplasmic	209	219	0.85
Transmembrane Helix	220	240	0.93
Non-Cytoplasmic	241	268	0.93
Transmembrane Helix	269	289	0.93
Cytoplasmic	290	302	0.82
Transmembrane Helix	303	321	0.94
Non-Cytoplasmic	322	335	0.88
Transmembrane Helix	336	354	0.94
Cytoplasmic	355	364	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVQEKYQI SPIFVFFLIH GAQFGAGVLG FARIIAKAAG YDGWMGVLIT GLCIHLLIWM  60
   61 MYFLLKETNG NLIDLQRQTF GKWIGNVFNI IFAAYFLIVS ISVIRTYVEI IQVWMFPTAS 120
  121 TFMLTLFLCL VSYYIISSGF RVITGICVIS VGGTIGYLFL SLFVLKYSHW DNLLPIFTHS 180
  181 FSDILKSAQL SIYSMTGFEI YLMVYPFVKK PMQSHKYAQL GALFSNLLYL FSTLLAFAFF 240
  241 SEKQLLKTIW AQLSMTQVIQ LPFIERLEYI AISGYALVII SSFILPLWAS MRATHEIFRV 300
  301 KQRGILIAFI IITLIISQLL TNRQDINNFI SNASKVSFWL IYVYIPILFI IVWVKRKWKK 360
  361 SKAN