YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259271, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.63
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	57	0.89
Transmembrane Helix	58	78	0.93
Cytoplasmic	79	85	0.80
Transmembrane Helix	86	106	0.92
Non-Cytoplasmic	107	110	0.74
Transmembrane Helix	111	133	0.87
Cytoplasmic	134	141	0.76
Transmembrane Helix	142	161	0.86
Non-Cytoplasmic	162	188	0.83
Transmembrane Helix	189	211	0.92
Cytoplasmic	212	229	0.86
Transmembrane Helix	230	255	0.90
Non-Cytoplasmic	256	270	0.82
Transmembrane Helix	271	291	0.76
Cytoplasmic	292	299	0.59
Transmembrane Helix	300	318	0.90
Non-Cytoplasmic	319	327	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKTWSFLI VTALLIVMTS LSAMKGSLEV GIVELVQGIF TGGNEDVEVI KDLRFPRIII  60
   61 ALFTGAALAV SGVLFQAVMK NPLADAGVIG ISSGASFMTL VIITLFPQFF FWTPVFAFLG 120
  121 GAFACYLVYA FSWKSGLSPL RIILVGIAIN AMFTGLNESF ITICGYFIKS IKQTTTSNIT 180
  181 MKTWGDVEIM VTYGTIGLVL ALFVGAWCNL LSLQDKTAKN LGLHVTRVRL IISVIAVLLA 240
  241 AVSTAIAGVI AFVGLLVPHI SRQLVGSDHK VLIPFSALAG ALLILTADTI GRLIVPPNEI 300
  301 PAATIMAVIG GPFLIFLLRK SDKVHGN