YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259232, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKAIAEFI GTFVLVLFGT GVAVIGGGIE GIGTLGIAMA FGLSIVAMAY SIGTISGCHI  60
   61 NPAVSVAMFI NKRMNAMELC YYVLAQILGG LLGAATLVTI LQSAKTPLDN LGQNGFGTLG 120
  121 LSGAFLVEFI LTFVFILVIV AVTGKKGSSS LAGLVIGFTL VLVHLLGIPL TGTSVNPARS 180
  181 IAPALFVGGE ALSQLWVFIV APILGGIVAA IVGKFILNTE K

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	36	0.70
Transmembrane Helix	37	60	0.86
Cytoplasmic	61	78	0.83
Transmembrane Helix	79	101	0.93
Non-Cytoplasmic	102	118	0.90
Transmembrane Helix	119	142	0.89
Cytoplasmic	143	150	0.81
Transmembrane Helix	151	171	0.92
Non-Cytoplasmic	172	194	0.89
Transmembrane Helix	195	217	0.92
Cytoplasmic	218	221	0.94