YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259223, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMFIFRRIL QLIPVLFGVV FVVFLIRQMV PGDPALLIAG EGASKETVEQ IRHQLGLDKP  60
   61 FIMQYFSYIG NILQGDFGVS IRSNRPVLDE VLIRLPITIE LALCSIVITV VIGMIAGIIS 120
  121 ATKQYSWTDV SIMIIALLGV SLPSFWFGLM LIFYFSVQIQ IFPVSGWGTW MHMVLPALTL 180
  181 GASGAAIVAR MTRSSMLDVI RQDYIRTARA KGVKERVVIY KHALRNALIP VITVVGLQFG 240
  241 ALLGGTVLVE SVFAINGLGR LIVDAIRMRD LPMLQGGVLI ASVIFVLVNL IVDILYRYFN 300
  301 KRIELN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.90
Non-Cytoplasmic	31	96	0.97
Transmembrane Helix	97	119	0.91
Cytoplasmic	120	129	0.79
Transmembrane Helix	130	154	0.86
Non-Cytoplasmic	155	168	0.85
Transmembrane Helix	169	191	0.89
Cytoplasmic	192	226	0.93
Transmembrane Helix	227	249	0.85
Non-Cytoplasmic	250	275	0.81
Transmembrane Helix	276	296	0.91
Cytoplasmic	297	306	0.84