YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49181146, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.79
Transmembrane Helix	12	37	0.92
Cytoplasmic	38	45	0.83
Transmembrane Helix	46	64	0.88
Non-Cytoplasmic	65	226	0.90
Transmembrane Helix	227	251	0.90
Cytoplasmic	252	258	0.82
Transmembrane Helix	259	277	0.92
Non-Cytoplasmic	278	283	0.57
Transmembrane Helix	284	304	0.82
Cytoplasmic	305	319	0.65
Transmembrane Helix	320	344	0.83
Non-Cytoplasmic	345	355	0.77
Transmembrane Helix	356	376	0.89
Cytoplasmic	377	385	0.72
Transmembrane Helix	386	412	0.86
Non-Cytoplasmic	413	446	0.85
Transmembrane Helix	447	467	0.93
Cytoplasmic	468	474	0.88
Transmembrane Helix	475	494	0.96
Non-Cytoplasmic	495	772	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGQWGYVAI SFIIGIAIAF SSSVVLLTCC LGLYVFFCLY RTSRKTFLYC MIVCFSGAMY  60
   61 TTYVQGQNKP LGESYEATRG VIYNTPLING DRLSFQVEDQ NKNIVQLSYK MKSASEKKQM 120
  121 RQLHAGVSCI FDGERKEPQI ARNFHGFNYR DYLYKQNIHF ILEATYISEC RKTSLSLVQW 180
  181 ILLLRQQAIL GVTEMFPEQS GAFMNALLFG DRQQMTFEVE GQYQQFGLVH LLAISGSHIV 240
  241 LLMVIVYFIL LRSGVTREIA TVCLIFFIPI YMILAGASPS VIRASITGVL MLIAFMCSIR 300
  301 LSSLDALSIT AICMLIFDPY LVFNIGFQFS FVGSFALLLS APLLLESGNG VIRNSIYISL 360
  361 ISQLVSTPIL LYHFGYYSPY SIFLNILYVP FLSLIVLPCS IIILICLPII PFLAKSFANV 420
  421 LSIGLNLSND FLSYCESLPF TRLNFGQTPI LLVALYCVSI ISVLMVWERR ISKGMVFIFA 480
  481 GIFLFISTGH YVYPYFRESG SVTFLDVGQG DAILIRLPYD QEIYLIDTGG TIRLNKEEWQ 540
  541 RKKHEFSVGN DVLIPYLQKE GIKKIDKLIV THGDADHIGA AQELLSNITV KEVVFGRKEQ 600
  601 EAILEKAVKK QALEKEVKIS EVGEGESWRV NEAEFFVLAP TGKERSENNA SIVLWAKLGG 660
  661 ITWLFTGDLE EGEKGLVATY PDLRADVLKV AHHGSNTSSI TPFLSAVQPN IAIISVGERN 720
  721 RYGHPHKEGI ERFEKMAIEI WRTDKQGAIS YVFKEERGTF RSKITYDETR NR