YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYNDKSQIT FSVQHLIERN TKQRKKTQRI NRIVPLLLKV IASVSIMTTL GIIFTLSNET  60
   61 IMFFQKIPLQ SFLTEKEWLP FFEDPKFGIL PLICGTVLVT AIAMFVAIPI GLACAVFLSE 120
  121 YASNGARKVL KPMLELLAGI PTIVYGFFAL TVVTPLLQRI IPDLQFFNAI SPGIVIGFMM 180
  181 IPTIASLSED AMRSVAKGTK EASLALGATR LEMVKQVVFP SAFTGIMAAI ILAASRAIGE 240
  241 TMIVVIAAGS TPNVSLDPTE SIQTLTAYIV QVSLGDAPHG TITYYSMYAV GATLFLFTFI 300
  301 MNIISQFIMR RFRRVT

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	55	0.95
Non-Cytoplasmic	56	87	0.96
Transmembrane Helix	88	118	0.85
Cytoplasmic	119	135	0.84
Transmembrane Helix	136	157	0.89
Non-Cytoplasmic	158	165	0.82
Transmembrane Helix	166	187	0.90
Cytoplasmic	188	216	0.94
Transmembrane Helix	217	238	0.88
Non-Cytoplasmic	239	283	0.94
Transmembrane Helix	284	305	0.90
Cytoplasmic	306	316	0.86