YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264342, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMLNHKKIQ ENMASRFLKD RIYKLLFYMA ILFSIVILLI LLFQIFEKGI SYLSLEFFTN  60
   61 FASRNPKEAG IAAALSGTIL FMSIVIPVSF IFGVGTALYL EQYAKESIFK KVIEINNQTL 120
  121 AGVPSVVFGL LGLTLFVYAL HLGESIIAAA LTMSLLVLPT VVVASQEAIR SVPNSLLEAS 180
  181 YGLGATKWQT MYRIVLPYAF PGIITGCTLA ISRAIGEAAP LLVIGALAFA NYVPFSMFDR 240
  241 FTVLPIQVFN WMSRPQEEFQ YVAAAGMIVL LGLLLLINIF VLWLRNRK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	45	0.90
Non-Cytoplasmic	46	77	0.89
Transmembrane Helix	78	100	0.92
Cytoplasmic	101	119	0.89
Transmembrane Helix	120	140	0.93
Non-Cytoplasmic	141	145	0.77
Transmembrane Helix	146	165	0.80
Cytoplasmic	166	197	0.72
Transmembrane Helix	198	232	0.63
Non-Cytoplasmic	233	260	0.69
Transmembrane Helix	261	284	0.92
Cytoplasmic	285	288	0.80