YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258794, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	30	0.92
Non-Cytoplasmic	31	41	0.85
Transmembrane Helix	42	65	0.91
Cytoplasmic	66	84	0.98
Transmembrane Helix	85	109	0.90
Non-Cytoplasmic	110	148	0.91
Transmembrane Helix	149	168	0.90
Cytoplasmic	169	177	0.81
Transmembrane Helix	178	197	0.94
Non-Cytoplasmic	198	221	0.93
Transmembrane Helix	222	245	0.88
Cytoplasmic	246	256	0.88
Transmembrane Helix	257	279	0.89
Non-Cytoplasmic	280	316	0.91
Transmembrane Helix	317	341	0.84
Cytoplasmic	342	354	0.87
Transmembrane Helix	355	377	0.90
Non-Cytoplasmic	378	384	0.87
Transmembrane Helix	385	406	0.90
Cytoplasmic	407	424	0.91
Transmembrane Helix	425	445	0.93
Non-Cytoplasmic	446	464	0.88
Transmembrane Helix	465	484	0.94
Cytoplasmic	485	508	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRQQWGTR AEFIFAAVGS AVGLGNIWRF PYTAYENGGG AFFLPYLFAL LTTGISLLAF  60
   61 EFALGHRHRG SAPLTFFRIH PRAEFIGWWQ MCVTFIVSTY YAVIIAWSIS YTYFAITGAW 120
  121 GKDTESFLFK EYLHVADKPG QFGGLVPEVL IPLALVWIIV LGVAFKGVKK GIEVVNRIFI 180
  181 PLLVVMFLII VVRAVTMEGA MQGLDAFFKP DWSRIFDGKV WLAAYGQIFF SLSLAFGIMI 240
  241 TYSSYLPKNS DTTNNAFITG FANSGFELLA GIGVFAALGF MANNMGVPVD KVASAGVGLA 300
  301 FVVFPQIINE LPMSPLFGVL FFLSLTVAGI TSLISLAEVC FAAVSEKFSL SRQKTIGIMG 360
  361 TLLVLVSLVF ATRGGLMFLD VVDYFANNFG LITIALVEVV TIGLILRRLP VYQNHANFVS 420
  421 DIKLGTFWRV SLLVITPLML GYMLIDGTIQ NIKKNYGGYP TEFVVTYGWS IAAAFLIVAL 480
  481 IISLKKWNAQ IHSDSAKLEK EWKDRGVS