YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263915, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.91
Transmembrane Helix	7	28	0.96
Cytoplasmic	29	48	0.96
Transmembrane Helix	49	72	0.89
Non-Cytoplasmic	73	78	0.75
Transmembrane Helix	79	97	0.94
Cytoplasmic	98	116	0.87
Transmembrane Helix	117	136	0.93
Non-Cytoplasmic	137	150	0.82
Transmembrane Helix	151	170	0.93
Cytoplasmic	171	177	0.74
Transmembrane Helix	178	197	0.92
Non-Cytoplasmic	198	201	0.83
Transmembrane Helix	202	220	0.97
Cytoplasmic	221	226	0.81
Transmembrane Helix	227	248	0.90
Non-Cytoplasmic	249	253	0.81
Transmembrane Helix	254	275	0.93
Cytoplasmic	276	299	0.90
Transmembrane Helix	300	323	0.87
Non-Cytoplasmic	324	324	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEQGLLVTA GVAFLISVAL SPLFIPFLRK LKFGQSIRDE GPKSHQKKSG TPTMGGIVIY  60
   61 VSMMVTSLIM AIKFNHLGAE VSLLLLVTFG YGLIGFLDDY IKVVKKRNLG LTSKQKLVGQ 120
  121 LVIAIAFFFI GKGQAFHTYI MIPGTDVKFE LGWAYFVLVL FMLIGGSNAV NLTDGLDGLL 180
  181 SGTAAIAFGA FSIIAVAQEQ FGVAIFCMAV VGAVLGFLVF NANPAEVFMG DTGSLALGGA 240
  241 IAAVAILLKQ ELLLVIIGGV FVMETLSVII QVISFKTTGK RVFKMSPLHH HYELCGWSEW 300
  301 RVVVTFWSVG FLLAVLGIYI GVWM