YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263739, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.69
Transmembrane Helix	9	31	0.91
Non-Cytoplasmic	32	60	0.72
Transmembrane Helix	61	84	0.83
Cytoplasmic	85	92	0.58
Transmembrane Helix	93	113	0.88
Non-Cytoplasmic	114	117	0.52
Transmembrane Helix	118	142	0.86
Cytoplasmic	143	150	0.63
Transmembrane Helix	151	173	0.94
Non-Cytoplasmic	174	193	0.68
Transmembrane Helix	194	218	0.82
Cytoplasmic	219	237	0.62
Transmembrane Helix	238	261	0.86
Non-Cytoplasmic	262	276	0.54
Transmembrane Helix	277	298	0.81
Cytoplasmic	299	305	0.43
Transmembrane Helix	306	326	0.88
Non-Cytoplasmic	327	335	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKTNAVPVT ILCIAPVLIL FTVILSVLYG AKNIDAQTVW NALFHFDSSD VNHNIIITSR  60
   61 LPRVVAALLV GAFLAISGAL MQGMTRNYLA SPSIMGVTDG AAFVITLCMI FLPGMSSIGM 120
  121 VVCSMIGSAL GAGIVFGFGS LLQNGLSPVR LAIIVTVIGT FLSSVSAAMA SYFQISQNVS 180
  181 FWFNAKLDQV DPNIIKITIP FGIIGIVLVL LISKSITILS LGEEVSINLG QRTKLVKAMA 240
  241 ILSVIFLTGT AVALVGKVGF VGLIIPHITR FIIGVDYKWI LPCAGVIGGV FLALCDILSR 300
  301 FVNYPFETPI GVVTSLIGIP FFLYLIRTRG GERHA