YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258269, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKFFAMST TVVLAAGLLS GCGTKESSAN KNADTKKGYV PKTLNVQFVP SQNADTLEAK  60
   61 AKPLEKLLSD KLNIPVKVSI STNYNTIVEA MASKQVDVGF LPPTAYVLAH EKKAANVILQ 120
  121 AQRFGVDDET GAPKKDLVDF YKSEFVVKKD SNINSVKDLK GKKIGYQDVT SSAGYVWPAA 180
  181 VLLKEGVDPL KDVKPVTLKG HDQSLIALLN GDVDAAVVFQ DARNIVKKDY PNIFDQTKIV 240
  241 KFTEKIPNDT ISVRSDLDEE WSKKLQDAFI EIGKNEEGHK IIKEVYSHEG YVKSDDSKFD 300
  301 IVREYGKKVK TQ

Type	Start	End	Confidence
Signal Peptide	1	24	0.96
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	312	0.99