YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258267, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVTIYSKS IPKPPSKLKH MLTAVLVILL LWGSSVQVDA SLSKLVVGFP NMMDLLKEMV  60
   61 PPDWSYFQVI TTAMLDTIRM AIIGTTLGAI LAIPLALCAA SNVFTSTFLY IPARMILNFI 120
  121 RTIPDLLLAA IFVAIFGIGP LPGILALTFF SIGLVAKLFY ESIESIDPGP LEAMTAVGAN 180
  181 KVQWIVYGVI PQVKAHFVSY VLYTFEVNVR AAAVLGLVGA GGIGLYYDRT LGFLQYQQTA 240
  241 SIIIYTLVVV LLIDYVSTLL REKL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	41	0.80
Non-Cytoplasmic	42	81	0.85
Transmembrane Helix	82	111	0.78
Cytoplasmic	112	125	0.68
Transmembrane Helix	126	150	0.87
Non-Cytoplasmic	151	183	0.62
Transmembrane Helix	184	198	0.33
Cytoplasmic	199	206	0.45
Transmembrane Helix	207	227	0.83
Non-Cytoplasmic	228	238	0.55
Transmembrane Helix	239	259	0.87
Cytoplasmic	260	264	0.66