YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258266, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTTIIVQK PKKPSVYRSF IFIALTFVYV WAFSGVPLEG IKDTAGEITK AIMTGVLNPD  60
   61 WAYVSLPDGE DLLHGLIDTL AIAILGTFIS AFLSVPFAFW AATNMSSGKL TSGTGKFVLS 120
  121 FVRTFPELVM ALLFIKAVGP GSFAGVLALG LHSIGMLGKL YSEGIENIDK GPTEALIATG 180
  181 ANRFQILWYA VLPQVLPDFL SYTLYRFEIN VRSAAILGVI GAGGIGTPLI FALSSRNWSR 240
  241 VGIILLGIIL MVIIIDFISS SIRKRIV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	35	0.91
Non-Cytoplasmic	36	79	0.92
Transmembrane Helix	80	101	0.93
Cytoplasmic	102	131	0.79
Transmembrane Helix	132	154	0.82
Non-Cytoplasmic	155	185	0.79
Transmembrane Helix	186	205	0.73
Cytoplasmic	206	212	0.78
Transmembrane Helix	213	233	0.93
Non-Cytoplasmic	234	240	0.73
Transmembrane Helix	241	260	0.94
Cytoplasmic	261	267	0.82