YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263573, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRAVIVEAK RTPIGKKNGM LKDYEVQQLA APLLTFLSKG MERAIDDVIL GNVVGPGGNV  60
   61 ARLSALEAGL GHHIPGVTID RQCGAGLEAI RTACHFIQGG GGKCYIAGGV ESTSTSPFQN 120
  121 RARFSPETIG DPNMGVAAEY VAESYNITRE MQDEYACLSY KRTLQALAKG YIHEEILSFN 180
  181 GLLDESIKPE MNYERIIKRT KPAFLHNGTV TAGNSCGVND GACAVLVMEE GQARKLGYKP 240
  241 VLRFVRSAVV GVDPNLPGTG PIFAVNKLLN ERNMKVEDID YFEINEAFAS KVVACAKELQ 300
  301 IPFGKLNVNG GAIALGHPYG ASGAMLVTRL FYQAKRERMK YGIATLGIGG GVGLALLFEK 360
  361 VED

Type	Start	End	Confidence
Non-Cytoplasmic	1	309	0.81
Transmembrane Helix	310	332	0.68
Cytoplasmic	333	340	0.75
Transmembrane Helix	341	358	0.86
Non-Cytoplasmic	359	363	0.76