YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258135, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.94
Transmembrane Helix	5	25	0.93
Cytoplasmic	26	45	0.86
Transmembrane Helix	46	67	0.87
Non-Cytoplasmic	68	76	0.79
Transmembrane Helix	77	98	0.91
Cytoplasmic	99	124	0.89
Transmembrane Helix	125	147	0.90
Non-Cytoplasmic	148	158	0.86
Transmembrane Helix	159	181	0.88
Cytoplasmic	182	189	0.79
Transmembrane Helix	190	213	0.89
Non-Cytoplasmic	214	241	0.93
Transmembrane Helix	242	261	0.92
Cytoplasmic	262	274	0.81
Transmembrane Helix	275	295	0.93
Non-Cytoplasmic	296	322	0.88
Transmembrane Helix	323	346	0.89
Cytoplasmic	347	370	0.84
Transmembrane Helix	371	388	0.96
Non-Cytoplasmic	389	394	0.84
Transmembrane Helix	395	415	0.94
Cytoplasmic	416	423	0.75
Transmembrane Helix	424	445	0.91
Non-Cytoplasmic	446	450	0.83
Transmembrane Helix	451	473	0.90
Cytoplasmic	474	479	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWYVIIPMI ISFIVVFLIG VYASRRVQAT APNKFLQEYF LGGRELGGLL LAMTMIATYG  60
   61 SASSFIGGPG IAYNMGLGWV LLSAIQVVTG YIVLTVIGKK FAIIARKMEA ITLIDYLKGR 120
  121 YNNKAVVILS AVCIIIFLFS ATVAQWVGGG RLIESLTGLS YTTALFLFTF SVLVYVLIGG 180
  181 FRAVALSDTL LGIIMLVGTT IILIATVIAG GGIEKIMQEL VQINPNLITP FGADGSLTKS 240
  241 YVTSFWILIG IGVVGLPQIS VRAMSYKNSK AMHQALIIGT IVVGTIMIGM HLTGVFARVV 300
  301 LPGIAVPDKV MPLLAMEVLP PWLAGVFLAA PMAAIMSTVN SLLLLVSSSI IKDIYVNYIN 360
  361 KDAADSTIRK GSLWITAIVG LLVYAAAIKP PDFLIWLNLF SFGGLEAAFI WPIVLGLYWR 420
  421 KGNATGALAS ILVGVSSYMC IHLFYPNPFG IHTVVFPICF AFIAYILGSM VAVKKNSIG