YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	36	0.84
Non-Cytoplasmic	37	66	0.89
Transmembrane Helix	67	87	0.95
Cytoplasmic	88	96	0.86
Transmembrane Helix	97	118	0.92
Non-Cytoplasmic	119	123	0.88
Transmembrane Helix	124	145	0.95
Cytoplasmic	146	154	0.85
Transmembrane Helix	155	177	0.91
Non-Cytoplasmic	178	199	0.92
Transmembrane Helix	200	219	0.93
Cytoplasmic	220	246	0.62
Transmembrane Helix	247	273	0.85
Non-Cytoplasmic	274	283	0.49
Transmembrane Helix	284	307	0.85
Cytoplasmic	308	314	0.46
Transmembrane Helix	315	335	0.88
Non-Cytoplasmic	336	338	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILNTDKK RAITVTTIFG CIGIAVILIS LNTGTLSIAP LKVIQTLFGY GDFESATVLY  60
   61 DYRMPRIIIT MLAGIGLGIS GAILQGLSRN ALADPGILGL HSGASFGLIV FVTFFHSINE 120
  121 NASILIPLFT FGGGVLAAFL IILLASDRSK GLLPIRLILV GIAVSAGFSA ISLFFSLKLN 180
  181 DETYTFASRW LVGNVWGRDW IHVLALLPWI FILTPYAWLK SKTLNALSLG DSVAAGLGVS 240
  241 VQKERLLLLA TAVGLSCGSV AMAGGIGFIG LVAPHIARKL VGTTYQHFLP LAGIIGMIIL 300
  301 VLADTIGRSI FEPNSIPAGV VVAALGAPYF LYLLTKTK