YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257991, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.90
Non-Cytoplasmic	55	59	0.73
Transmembrane Helix	60	79	0.91
Cytoplasmic	80	109	0.95
Transmembrane Helix	110	131	0.91
Non-Cytoplasmic	132	149	0.87
Transmembrane Helix	150	168	0.96
Cytoplasmic	169	177	0.80
Transmembrane Helix	178	198	0.92
Non-Cytoplasmic	199	214	0.83
Transmembrane Helix	215	236	0.84
Cytoplasmic	237	263	0.88
Transmembrane Helix	264	282	0.95
Non-Cytoplasmic	283	311	0.91
Transmembrane Helix	312	336	0.86
Cytoplasmic	337	357	0.95
Transmembrane Helix	358	376	0.96
Non-Cytoplasmic	377	383	0.75
Transmembrane Helix	384	405	0.89
Cytoplasmic	406	417	0.83
Transmembrane Helix	418	437	0.91
Non-Cytoplasmic	438	439	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNTAKKIE VQAENTALNN EQYADPKKWH KQDTTWALSL FGTAIGAGVL FLPINAGSGG  60
   61 LLSLLLITLL AYPVMYYSHR ALAKMIYASN SADEGITGTI REYFGNKASI IFNIVYFGSI 120
  121 YTIVLMYSVA LTNTASSFIV HQLHMPEPPR AILSLVLVLG LIAILNFGQD ITVKVMSMLV 180
  181 YPFIVSLLFI AISLIPQWNT SMLSFSAVST ASTGTGYFGT IVMILPIIVF SFNHSPMISS 240
  241 FVVKQRATYG IEATDAKCAQ IQKVCYIMTF AVVMFFVWSS ALSLTPDDIK MAKEQNLLIL 300
  301 SYLANELNSP VITIAAPIIA FVAITKSFLG HYIGAFEVMR DMIIKFGKSR GKDIEEKTIK 360
  361 TIILTFVVLS CWFVAYTNPS ILGLIDSLSG PLVAAILCLL PMYAIQKVPV LAKYKGKMSN 420
  421 VFVIIVGVLT VLASIKSLF