YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263218, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.90
Non-Cytoplasmic	55	59	0.73
Transmembrane Helix	60	79	0.91
Cytoplasmic	80	109	0.95
Transmembrane Helix	110	131	0.91
Non-Cytoplasmic	132	149	0.87
Transmembrane Helix	150	168	0.95
Cytoplasmic	169	177	0.81
Transmembrane Helix	178	198	0.92
Non-Cytoplasmic	199	217	0.85
Transmembrane Helix	218	238	0.88
Cytoplasmic	239	263	0.87
Transmembrane Helix	264	282	0.92
Non-Cytoplasmic	283	311	0.92
Transmembrane Helix	312	335	0.88
Cytoplasmic	336	357	0.93
Transmembrane Helix	358	376	0.97
Non-Cytoplasmic	377	382	0.85
Transmembrane Helix	383	405	0.91
Cytoplasmic	406	417	0.86
Transmembrane Helix	418	435	0.95
Non-Cytoplasmic	436	439	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNTAKNIE FQVDNTTVKN EKYLDPKKWH KQDTTWALSL FGTAIGAGVL FLPINAGSGG  60
   61 LLSLLLITIL AYPVMYYSHR ALAKMIYASN SADEGITGTI REYFGNKASI IFNIVYFVSI 120
  121 YTIVLMYSVA LTNTASSFIV HQLHMPEPPR AILSLVLVIG LITILNFGQD ITVKIMSMLV 180
  181 YPFIASLLFI AISLIPQWNT SMLSFSSVST ASTGTGYFGT IWMILPIIVF SFNHSPMISS 240
  241 FVMKQRATYG IDATDAKCAQ IQKVCYIMTF AVVMFFVWSS TLSLTPDDLK VAKEQNLSIL 300
  301 SYLANELNSP VITIAAPIIA FVAITKSFLG HYIGAYEVMR DMIIKSGKKR GKDIGEKTVK 360
  361 TMILTFVVLT CWYVAYTNPS ILGIIDALSG PLVAAILCLL PMYAIRKVPV LAKYRGKMSN 420
  421 VFVIIIGILT VLASIKSLF