YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263130, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.98
Transmembrane Helix	10	32	0.91
Non-Cytoplasmic	33	38	0.84
Transmembrane Helix	39	61	0.88
Cytoplasmic	62	77	0.94
Transmembrane Helix	78	101	0.90
Non-Cytoplasmic	102	107	0.87
Transmembrane Helix	108	129	0.92
Cytoplasmic	130	139	0.80
Transmembrane Helix	140	159	0.92
Non-Cytoplasmic	160	183	0.84
Transmembrane Helix	184	204	0.93
Cytoplasmic	205	214	0.98
Transmembrane Helix	215	238	0.84
Non-Cytoplasmic	239	249	0.84
Transmembrane Helix	250	272	0.88
Cytoplasmic	273	282	0.81
Transmembrane Helix	283	305	0.85
Non-Cytoplasmic	306	311	0.65
Transmembrane Helix	312	335	0.88
Cytoplasmic	336	346	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLSFLDRY LTLWIFLAMA VGIGLGFVFP SVVDGLNTLQ VGTTSIPLAV GLIVMMYPPL  60
   61 AKVRYEEMGR VFKDVKVLVL SLVQNWIIGP VLMFVLAIIF LPDKPEYMVG LIMIGLARCI 120
  121 AMVIVWNDLA DGDKEYAAGL VAFNSVFQML FFSVYAYVFV TVIPEWLGIE GAIVDITMIE 180
  181 VAKSVFIYLG IPFIAGMLTR FVLVKLKGRQ WYEKVFIPKI SPLTLIALLF TIIIMFSLKG 240
  241 EMIVSVPLDV VRIAIPLLIY FIVMFFVSFF MGRKIGANYP VTTTLAFTAG SNNFELAIAV 300
  301 AVGVFGIHSG AAFAAVIGPL VEVPVMIALV NVAFWFKRKY FNDQLV