YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263122, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKNVVLSI LCIFVFALTA CSSNTNGKEE GSGKLKVVTT YSIIYDMVKQ IGGEKVEIHS  60
   61 LVPIGANPHE YDPLPKDVMK MTDADMVLYN GLNLEEGGAW FKKLLKTANK SEKDAPVYKV 120
  121 SEGVEAIYLE TKGLEKEPDP HAWMNIKNGI LYAENVKKAL IKEDPKNKEF YTKNADNYVA 180
  181 ELQKLHDETV NRIHQIPEEK RFLISSEGAF KYFGKAYDIK TGYIWEINSE NQGTPDQIRD 240
  241 VVSVIQTNKV PALFVETSVD RRSMETVSKE TNVPIAGTIF TDSLGKSGED GDTYLKMMKW 300
  301 NIDTIINGLQ K

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	311	0.99