YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49179894, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	39	0.94
Non-Cytoplasmic	40	44	0.79
Transmembrane Helix	45	64	0.95
Cytoplasmic	65	95	0.93
Transmembrane Helix	96	114	0.96
Non-Cytoplasmic	115	119	0.74
Transmembrane Helix	120	138	0.92
Cytoplasmic	139	147	0.67
Transmembrane Helix	148	168	0.91
Non-Cytoplasmic	169	176	0.69
Transmembrane Helix	177	197	0.85
Cytoplasmic	198	219	0.79
Transmembrane Helix	220	241	0.85
Non-Cytoplasmic	242	242	0.33
Transmembrane Helix	243	260	0.55
Cytoplasmic	261	280	0.52
Transmembrane Helix	281	302	0.90
Non-Cytoplasmic	303	303	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEKEISSA KLIWKMTRPH TLTATFSPVI LGTVASLYVA KIDWLLFIAM MVACLALQIA  60
   61 TNLFNEYYDF KRGLDTADSV GIGGGIVRHG LKPKNVLTVA LLLYVVAAII GVYICMNSSW 120
  121 WLVVIGLIGM AVGYLYTGGP LPIAYTPFGE LVSGLLMGTC FVLIAFFIQT NTITTESVLI 180
  181 SIPIGILVGA INMSNNIRDI EEDIKGGRKT LVILLGREKA VVTLAIAFFI AYLWIAVIVW 240
  241 MGYISPWALV MFLGLRKPIS AIQSFQKGAK DPGYMRIAMK STAMTNTIFG FLLSAGLLIS 300
  301 YLF