YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263092, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLMDDFSD EYKNESYYVE GTVSKEYIKN KVLTISEVAE VHYIKDLIPK VLIGSTALLI  60
   61 DGLADVFILG TTKANKRNME EPVSEALVRG PRVGFTEVLS DNTSLLRRHC ADENLSLVKL 120
  121 PVGERAKKEL VVAFIKDLAS TELVEEIKNR IQKIDIDSVL ESGYIEQLIE DNYLSPFPQI 180
  181 QNTERPDRVI SALMEGRVAI LLDGTPFVLI APVTFSMLLQ SPEDYYERWL PGTLLRLLRF 240
  241 MTAFVSLFAP ALYISFISFH PGLIPTKLAI SILGSREGVP FPALIEALIM EVAIEVLREA 300
  301 GLRLPKPIGP AMGIVGGLII GQAAVEAGIV SPIMVIVVAV TAISSFTIPQ YSVGITLRIL 360
  361 RFVAMFCAAI FGLYGVILFF LLLCSHLVKL KSFGVPYTSP AVPYRFSDWK DFMVRMPLKI 420
  421 MRRRPKIMHT KKTNRKR

Type	Start	End	Confidence
Cytoplasmic	1	197	0.78
Transmembrane Helix	198	219	0.71
Non-Cytoplasmic	220	236	0.58
Transmembrane Helix	237	260	0.85
Cytoplasmic	261	306	0.58
Transmembrane Helix	307	325	0.77
Non-Cytoplasmic	326	328	0.52
Transmembrane Helix	329	353	0.77
Cytoplasmic	354	361	0.59
Transmembrane Helix	362	383	0.94
Non-Cytoplasmic	384	437	0.67