YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263086, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	29	0.95
Non-Cytoplasmic	30	42	0.84
Transmembrane Helix	43	65	0.92
Cytoplasmic	66	77	0.87
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	119	0.97
Transmembrane Helix	120	142	0.90
Cytoplasmic	143	153	0.88
Transmembrane Helix	154	175	0.90
Non-Cytoplasmic	176	196	0.91
Transmembrane Helix	197	216	0.95
Cytoplasmic	217	228	0.90
Transmembrane Helix	229	250	0.89
Non-Cytoplasmic	251	282	0.91
Transmembrane Helix	283	305	0.92
Cytoplasmic	306	320	0.76
Transmembrane Helix	321	341	0.90
Non-Cytoplasmic	342	347	0.70
Transmembrane Helix	348	368	0.91
Cytoplasmic	369	374	0.85
Transmembrane Helix	375	396	0.87
Non-Cytoplasmic	397	413	0.85
Transmembrane Helix	414	434	0.93
Cytoplasmic	435	450	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKVPTSFI IIIGLMLFAL FFGAGNLIFP PMLGQMAGNN VWIANAGFLV TGVGLPLLAI  60
   61 TAFVFSGESD LQSLASRVHP VFGIVFAIVL YLAIGPFYAI PRSGTVSFEI GIKPFLSNDA 120
  121 GPAALTVFTI LFFIVTCLLS LNPTKLVDIV GKILTPIKLT VIGMLVVVAF IHPIGRIQAP 180
  181 SEVYASDAFF KGFQEGYLTL DALGAFVFGI IIVNAIREKG ATTKKQLMVV CVKATTIAAT 240
  241 LLALIYTALS YMGASSVEKL GHLNNGAEVL AKVSDYYFGS YGAIFLGVMI IVACLITSVG 300
  301 LITACSSFFH KLFPKISYKK LAIILSVFST LVANIGLTQL IKISIPVLIT MYPIAITLIF 360
  361 LTFLHSVFNG RFEVYQGSLI LTFIFSSLDG LKAAGIESEI IHNFFEHFLP LYSVGLGWGF 420
  421 PAIIGGVCGY VVSVLRKKNT LSSSETQLNK