YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262955, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQLINTVVP FIILWYLAYK SLSVSYLLAV VPSLLAAGFM TRIFIIFHDC THYSFFKSRR  60
   61 ANRIVGTCMG VLTLFPFDQW GHDHAIHHAT SGNLDKRGTG DIWTLTVDEY VAAPLRLRLA 120
  121 YRLYRNPFVM FGLGPIYVFL LKNRFNRKGA RQKERMNTYL TNIIIVAVVA ILCWAIGWQS 180
  181 FLLVHGTIFL IAGSVGIWLF YVQHTFEDSY FEEDKDWEYV KAAVEGSSFY KLPKILQFLT 240
  241 GNIGFHHVHH LSPRVPNYKL EEAHNNTLPL KNVPTITLAT SLRSLRFRLW DEKSNNFVSF 300
  301 KEVKNIIKNN VSVRVKSEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.74
Transmembrane Helix	21	45	0.84
Cytoplasmic	46	60	0.85
Transmembrane Helix	61	80	0.85
Non-Cytoplasmic	81	122	0.95
Transmembrane Helix	123	141	0.91
Cytoplasmic	142	157	0.87
Transmembrane Helix	158	178	0.93
Non-Cytoplasmic	179	182	0.80
Transmembrane Helix	183	202	0.94
Cytoplasmic	203	319	0.97