YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262934, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	31	0.90
Non-Cytoplasmic	32	37	0.80
Transmembrane Helix	38	57	0.92
Cytoplasmic	58	63	0.75
Transmembrane Helix	64	82	0.89
Non-Cytoplasmic	83	88	0.73
Transmembrane Helix	89	109	0.91
Cytoplasmic	110	115	0.79
Transmembrane Helix	116	137	0.90
Non-Cytoplasmic	138	152	0.84
Transmembrane Helix	153	176	0.92
Cytoplasmic	177	206	0.91
Transmembrane Helix	207	230	0.90
Non-Cytoplasmic	231	235	0.76
Transmembrane Helix	236	254	0.75
Cytoplasmic	255	260	0.57
Transmembrane Helix	261	281	0.79
Non-Cytoplasmic	282	285	0.61
Transmembrane Helix	286	306	0.88
Cytoplasmic	307	317	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMLKIHEM SIITLLLIYI AIVGMINPSF IQFNSLSLMV KSSVILVVLA IGQSFVLFTK  60
   61 NIDVSVGSSM GLSAAVCGML LTNEYSASLS IFAAITLGAI IGFVNGMGVA KFRVPAIIMT 120
  121 LGMLGIIRGA MLIFTGGKWI EDIPNDFKQL SSIVILGLPI TVWFVLIILL LLYFFLRKVP 180
  181 FGRYFYAVGD NEDGARLIGI PVNKVKICAF IISGISAALA GCIFVMNIGF IPNQTGTGLE 240
  241 LQVIAAAVLG GIHLKGGTGS LFGAALGALF LETISSSLVF LKIPAFWNNA ISGFLLLLII 300
  301 ILDSVMKKWK AERRMNL