YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTKAVIKR ASITIEKNNV KKVQKTNIKF LIRAITIPII ILIIWQLAGV FGLVSKTVLP  60
   61 TPLDIFVAFQ ELIKTGELFG HLSISVFRAA AGFFIGGSLG IILGTIVGFS TRSEQYLDPS 120
  121 VQMLRTVPHL AVAPLFVLWF GFGETSKVLL IADGAFFPLY VNAFLGIRGV DSKLFDVARV 180
  181 LEFSKRKLIT KLILPATLPN LLLGARLSLG VAWVSLVVAE LMGSTEGIGY MIMDARQFSN 240
  241 TDIVFVGIII FAFVGKFSDS LVRLLEVKFL RWRDGFKGET GN

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	53	0.86
Non-Cytoplasmic	54	88	0.91
Transmembrane Helix	89	109	0.95
Cytoplasmic	110	122	0.86
Transmembrane Helix	123	142	0.91
Non-Cytoplasmic	143	148	0.80
Transmembrane Helix	149	170	0.85
Cytoplasmic	171	191	0.85
Transmembrane Helix	192	217	0.74
Non-Cytoplasmic	218	240	0.74
Transmembrane Helix	241	262	0.82
Cytoplasmic	263	282	0.86