YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257432, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.89
Transmembrane Helix	12	35	0.87
Cytoplasmic	36	59	0.85
Transmembrane Helix	60	85	0.76
Non-Cytoplasmic	86	90	0.66
Transmembrane Helix	91	114	0.81
Cytoplasmic	115	134	0.94
Transmembrane Helix	135	156	0.89
Non-Cytoplasmic	157	173	0.84
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	203	0.84
Transmembrane Helix	204	225	0.92
Non-Cytoplasmic	226	232	0.82
Transmembrane Helix	233	258	0.72
Cytoplasmic	259	291	0.84
Transmembrane Helix	292	314	0.88
Non-Cytoplasmic	315	353	0.91
Transmembrane Helix	354	374	0.95
Cytoplasmic	375	393	0.90
Transmembrane Helix	394	415	0.88
Non-Cytoplasmic	416	421	0.71
Transmembrane Helix	422	441	0.90
Cytoplasmic	442	496	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLVEWLVG QVWSIGLVVF ALGAGVYFTI ATRFLQIRYF KEMIKLLFEG KSSETGISSF  60
   61 QAFCLALSGR VGIGNIAGVA TAIAFGGPGA VFWMWVMALL GAASAFVEST LSQIYKSKVE 120
  121 NEYRGGTPYF IEKGLNMKWF AVIVAVVVTL SYGVLLPGIQ SSSIAVGFEN SNGISKYITG 180
  181 ILLVVLLAAI IFGGVKRIAG VSQMLVPFMA IGYVIVTCIV LIANVKEIPS MFALIFSSAF 240
  241 GVNEMFGGIV GAAIAWGVKC AVFSNVAGVG EATYSSAAAE VSHPAKQGLV QAFSVYIDTI 300
  301 VVCTATALMI LITGMYNVIP EGKSAIVKNI GNVDAGPIYT QQAVETVMTG FGPLFISIAI 360
  361 FFFAFTTLLA YYYIAETTLT YLDRELKHSW LKPVLKIGFL IMVYIGSVES ASLLWNLGDL 420
  421 GIGSMAWLNL IAILLLSKIA LKVLKDYETQ KKEGKDPVFD PKNVGIEGLT FWEERSKEVA 480
  481 RKNSKEQAVV DDSLKL