YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262629, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVYINQHV LNNLLYILSS IFIFYFIYDS GRYLKKYKKL LIILCTSIPL ILCMRYPIYM  60
   61 DENCIHDLRQ IPVIIGTLYG GFPVGITLFA ILLITRFSFY GFSMLTIVVY GTMFIITAFA 120
  121 SAKFNTYNRK IKVTYAMFLT FFLAIFTTVI VLTLSDFEVN NLYIIYFIIL PTILMLFVVY 180
  181 FNEVLKDALC MRSKLIKMEK MEIVSQLAAS ISHEVRNPLT VVKGFTQLLK TPNLTPESRD 240
  241 EYIKHILEEL HRAQGIIDDY LTFAKPASEK LDEISVEQEL NRVINMILPL CNMNTIHITK 300
  301 DFSMATIVGN KQHFQQCFLN LIKNGIEAMP NGGTLNISSS ISNNKVIIRI EDSGIGMSQE 360
  361 QVNRFGEPYF NTKTKGTGLG TMVAVKIIET MQGSLRIRSV VNKGTTLTIT FPKCSQNSSD 420
  421 NK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	28	0.92
Non-Cytoplasmic	29	39	0.68
Transmembrane Helix	40	59	0.86
Cytoplasmic	60	70	0.90
Transmembrane Helix	71	94	0.87
Non-Cytoplasmic	95	100	0.70
Transmembrane Helix	101	122	0.89
Cytoplasmic	123	132	0.80
Transmembrane Helix	133	154	0.93
Non-Cytoplasmic	155	161	0.84
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	422	0.94