YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257197, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAIYKVFL ICILCNVFML CITHPKVYAQ QNVKVTLDKY IEKFIKEQNI PGAAVAIVHN  60
   61 KEVFFTKTMG VTGESEKKVT SKTPFAIGSI SKSLTALAIV KLIEDKKIKL EDPVQRYLPW 120
  121 FKLKNPQISS TITIQHLLTH TSGINTYEGL ALSDKQSKSS TALKENVMKL SNVKVTAPPG 180
  181 EKYQYSNANY IVLGALIEEV TNETYSSYME KYIFQPLNMN GAAASKENAY EKGYLTGYQS 240
  241 WFGIPRKSVV SYDNTGAPYG YITANLEDMI QYIMFLNRPE DAQLLKQENI HLYLSPLYKI 300
  301 NSEKSYGFGL RTTNINESET MIWHSGSTPD ARAELFTLNE SGWSGVILTN KNHVLEETAL 360
  361 SVLKKGIISI LNGEEPVDIP KKIPLTQIIL LVVTLILFII SIMLIKKYKH MKTVKKVIWL 420
  421 FIGSLSLLLS IIFIPLFTYS TSSPWRTIKI FAPDVALFTS ISVTLLAVNG LISIFIALRR 480
  481 K

Type	Start	End	Confidence
Signal Peptide	1	29	0.95
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	384	0.99
Transmembrane Helix	385	405	0.93
Cytoplasmic	406	416	0.90
Transmembrane Helix	417	439	0.93
Non-Cytoplasmic	440	454	0.93
Transmembrane Helix	455	478	0.91
Cytoplasmic	479	481	0.95