YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.84
Transmembrane Helix	20	36	0.93
Non-Cytoplasmic	37	54	0.85
Transmembrane Helix	55	77	0.90
Cytoplasmic	78	84	0.88
Transmembrane Helix	85	105	0.93
Non-Cytoplasmic	106	115	0.68
Transmembrane Helix	116	137	0.89
Cytoplasmic	138	147	0.89
Transmembrane Helix	148	169	0.93
Non-Cytoplasmic	170	176	0.87
Transmembrane Helix	177	197	0.95
Cytoplasmic	198	230	0.95
Transmembrane Helix	231	253	0.83
Non-Cytoplasmic	254	262	0.88
Transmembrane Helix	263	285	0.90
Cytoplasmic	286	292	0.88
Transmembrane Helix	293	312	0.95
Non-Cytoplasmic	313	320	0.79
Transmembrane Helix	321	344	0.90
Cytoplasmic	345	356	0.85
Transmembrane Helix	357	378	0.92
Non-Cytoplasmic	379	384	0.75
Transmembrane Helix	385	406	0.90
Cytoplasmic	407	426	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAISSNKTF MDRIGIPSNL TWGYIGIIVF MIGDGLEQGW LSPYLVEKGL TLEHAAFLFT  60
   61 IYGITVSASS WFSGVFVQMW GPRKVMTFGL VSFILGSIGF IGIGIQHMNY PVILICYALR 120
  121 GFGYPLFAYS FLVWVSYSTP QQMLSRAVGW FWFVFQLGLS VIGAFYSSYM VPKIGEIATL 180
  181 WSALIFVVVG GLFSIVVNKD KFKAQTVSAN KSSELLKGIT IAFENPKVGI GGIVKIINSA 240
  241 AQFGFVVFLP TYMMKYNFTM TEWLQIWGTL FFVNMVFNII FGIVGDKFGW INTIKWFGGV 300
  301 GCGIVTLALY YVPQMVGHNY WAILFVACCY GATLAGYVPL TALVPSLSPE NKGAAMSVLN 360
  361 LGSGLSAFVG PLVVTAFIGP LGVGGVMWIF AGLYFFGAFL THFLTIPKEN EMEQDLNTKS 420
  421 GEQFSV