YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257093, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.88
Transmembrane Helix	31	50	0.95
Non-Cytoplasmic	51	70	0.83
Transmembrane Helix	71	93	0.89
Cytoplasmic	94	101	0.74
Transmembrane Helix	102	121	0.74
Non-Cytoplasmic	122	132	0.71
Transmembrane Helix	133	155	0.83
Cytoplasmic	156	175	0.68
Transmembrane Helix	176	197	0.89
Non-Cytoplasmic	198	218	0.64
Transmembrane Helix	219	242	0.85
Cytoplasmic	243	252	0.55
Transmembrane Helix	253	272	0.57
Non-Cytoplasmic	273	279	0.78
Transmembrane Helix	280	301	0.95
Cytoplasmic	302	335	0.71
Transmembrane Helix	336	361	0.78
Non-Cytoplasmic	362	385	0.65
Transmembrane Helix	386	407	0.91
Cytoplasmic	408	428	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFVTFLDK NLSGPMARLS EQRHLQAIRD GVISALPFII VGSFFLIVAF PPLPKDSFIS  60
   61 VWALKNQTSI LIPYRLTMFI MSLYIAFGIG YNLAKSYKLD ALSGAQLAVC SLLLTLTPEL 120
  121 IDKKGFMLPM TNLGGHGLFV TMIVSILSVE ILRFCKKNNV TIKMPEQVPP SVSRSFEALI 180
  181 PAAFVIIIIM SLITVVFKVD VHYVVDKLAA PLVKAGDSYF GVIIPVFLIT FFWSFGIHGV 240
  241 SVVGTVARPL WDVYLGKNGE AVASGASQFP FIAPEPFYQW FIWIGGSGAT LGLVLAMIVF 300
  301 GRSKYSKALS RTCIVPGIFN INEPVIFGLP IVLNPILIIP FVITPLVTAT IAYAATAMGF 360
  361 VTPTHIMPPW TLPAPIGAYL ATGGDWRAIV LVLINIAISF LIYLPFFKMY DKNMLEIEKN 420
  421 GEGESVNP