YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257026, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLWIPMIV TFFSFGGLLL GGAVSIATRQ LIEEKMHRLY ALCGGVLLGL LSLEIIPETF  60
   61 SSYEIIGPIL GIAIGVLVMS LLDNYCHHPM IHKKDQQAWQ TFLFLSFAIF IHNLPSGFAL 120
  121 GTAFINHADS AIPFLMAIVI HHIPEGLALI IPFLFTKHKY ISFLLTTLLL SLILGTGTVF 180
  181 GILMEGKALH LQGLIMGSAI GSLGYVTIHE MLWKAKKQLS FLTFLMWASS GFFLIIVFTL 240
  241 LAGHH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	28	0.94
Cytoplasmic	29	37	0.85
Transmembrane Helix	38	57	0.94
Non-Cytoplasmic	58	64	0.83
Transmembrane Helix	65	86	0.91
Cytoplasmic	87	100	0.89
Transmembrane Helix	101	124	0.87
Non-Cytoplasmic	125	131	0.81
Transmembrane Helix	132	155	0.88
Cytoplasmic	156	162	0.78
Transmembrane Helix	163	183	0.95
Non-Cytoplasmic	184	188	0.85
Transmembrane Helix	189	209	0.92
Cytoplasmic	210	220	0.82
Transmembrane Helix	221	242	0.95
Non-Cytoplasmic	243	245	0.81