YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256920, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDFIQTFQE RKIELLTALS EHLQISLISL FFAVIIAVPL GILLTRKERM AELIIGTSAV  60
   61 MQTVPSLALL GLLIPLVGIG KIPAVIALVV YALLPILRNT YTGIRELDES LIEAAKAMGM 120
  121 NSWRRLWKVE LPLALPIIMA GIRTAMVLIV GTATLAALIG AGGLGKLILL GIDRNDHALI 180
  181 ILGAVPAALL ALFFDVVLRV LEKPKRSSKR VILTICIVCI MVASPFLWNT EKKDIVIAGK 240
  241 LGSEPEILIQ MYKQLIEQDT DLHVQLKPGL GKTAFVFEAL KSGEVDIYPE FSGTALSTFV 300
  301 KEEPKSTNRD EVYEQARVGM EKKYNMVMLK PMEYNNTYAL AMPKKIADQN NINTISDLGN 360
  361 IAQDTKVGFT LEFADREDGY KGMQKLYNYK FSNVKTMEPK LRYSAIQSGD VNVIDAYSTD 420
  421 SELEQYGLKA LKDDKGLFPP YQGAPLLRKE TLQKYPELEK VLNKLSGKIT DEEMRKMNYE 480
  481 VNVNGKNSEE VAKQFLQKEN LLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.89
Transmembrane Helix	23	44	0.92
Cytoplasmic	45	52	0.80
Transmembrane Helix	53	74	0.86
Non-Cytoplasmic	75	78	0.63
Transmembrane Helix	79	101	0.80
Cytoplasmic	102	143	0.85
Transmembrane Helix	144	164	0.83
Non-Cytoplasmic	165	177	0.77
Transmembrane Helix	178	198	0.96
Cytoplasmic	199	209	0.83
Transmembrane Helix	210	228	0.94
Non-Cytoplasmic	229	503	0.97