YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262231, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	30	0.95
Non-Cytoplasmic	31	39	0.78
Transmembrane Helix	40	60	0.94
Cytoplasmic	61	86	0.90
Transmembrane Helix	87	112	0.83
Non-Cytoplasmic	113	139	0.89
Transmembrane Helix	140	159	0.93
Cytoplasmic	160	171	0.84
Transmembrane Helix	172	191	0.94
Non-Cytoplasmic	192	215	0.91
Transmembrane Helix	216	239	0.86
Cytoplasmic	240	249	0.92
Transmembrane Helix	250	272	0.90
Non-Cytoplasmic	273	297	0.85
Transmembrane Helix	298	321	0.86
Cytoplasmic	322	339	0.89
Transmembrane Helix	340	362	0.91
Non-Cytoplasmic	363	377	0.88
Transmembrane Helix	378	398	0.92
Cytoplasmic	399	418	0.96
Transmembrane Helix	419	443	0.87
Non-Cytoplasmic	444	446	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTEQWTSK LGFIMAAAGS AIGLGAIWKF PYIAGKSGGG AFFLIFILFT VLIGLPLLIA  60
   61 EFMIGRSTQK QAVDAFKSIA PNTGWHWIGR LGVGTCFILL SFYSVVGGWV FIYLFRGVTG 120
  121 QLITPGQNYG ALFTETIGNP AWAILGHFAF MFITIWVVSK GVQNGIEKAS KYMLPALFVL 180
  181 FVALIVRSLT LDNAMQGVKF FLQPDFSKIT SESILFAMGQ SFFAISIGIS IMVTYSSYLN 240
  241 KKESLPKSAI TIVGLNLFVS LFAGLAIFPA VFSLGMEPTE GPGLLFIVLP SVFSQIPFGG 300
  301 FFLTVFLALF TFATLTSAFS LLETVVSALA NGEQERRTKL SWMIGFCIFL VGIPSALSFG 360
  361 VWSDITIFGK NIFDAVDFLS SNILMPLGAL FISIFVSFKM EKKVLEADFF VGGNYGKKVF 420
  421 TCWAFLLRFV APLAIIIVFL NVIGVI