YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262149, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDQFLWVLF PYIIFAIFIG GHIFRYNYDQ FGWTSKSSEL LEKKMLRIGS ILFHFGIMFV  60
   61 IGGHVMGILI PEAVYRSIGI SEHMYHVVAI SFGLPAGIAS IIGLIILTYR RVTVKRIIAT 120
  121 STKGDYIALI LLLIVMLAGL SSTFLNIDSK GFDYRTTIGP WFRSLFIFQP KVEYMTEVPV 180
  181 WFKIHILAGL GLFAVWPFTR LVHVFSAPIK YISRSYVIYR RRIPNELKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.84
Transmembrane Helix	8	26	0.97
Cytoplasmic	27	47	0.90
Transmembrane Helix	48	70	0.90
Non-Cytoplasmic	71	85	0.90
Transmembrane Helix	86	109	0.90
Cytoplasmic	110	125	0.91
Transmembrane Helix	126	145	0.94
Non-Cytoplasmic	146	183	0.92
Transmembrane Helix	184	204	0.90
Cytoplasmic	205	229	0.92