YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256608, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKWGRIT ILLVIILGIC WFLFQGTQKS VTNVEGQPLQ VAELPKTGLT EKVVPPKYIP  60
   61 PEVDAKAAMI IDASNGDIIY QHNENEAFAP AAQTEGARIP VQVNDTLTVK DLFHALMIES 120
  121 ANNSAVALAE HMAKTEKDFV QLMNAKAKQL KMSDYAKFAN ASGLQEPDGS ETKMTAADVA 180
  181 NLAYHLIKDY PEILEVTHLR QSQLAFNNIN VISTNDMLNK NNKALYIEGI DGLKTGFTDS 240
  241 AGYCFTGTAK QGDTRIITVV MGTKGKTKRF TETNKLMTYA FGLVN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	27	0.49
Non-Cytoplasmic	28	285	0.99