YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261976, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.82
Transmembrane Helix	7	32	0.86
Cytoplasmic	33	52	0.73
Transmembrane Helix	53	72	0.78
Non-Cytoplasmic	73	79	0.63
Transmembrane Helix	80	101	0.88
Cytoplasmic	102	114	0.95
Transmembrane Helix	115	136	0.88
Non-Cytoplasmic	137	157	0.84
Transmembrane Helix	158	180	0.89
Cytoplasmic	181	194	0.90
Transmembrane Helix	195	217	0.90
Non-Cytoplasmic	218	228	0.79
Transmembrane Helix	229	246	0.97
Cytoplasmic	247	253	0.87
Transmembrane Helix	254	275	0.92
Non-Cytoplasmic	276	302	0.88
Transmembrane Helix	303	325	0.89
Cytoplasmic	326	338	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLNELWFI IIAVLFVGFF VLEGFDFGVG IVSRFLGEND LEKRIYLNTI GPFWHANEVW  60
   61 LVCAGGAMFA AFPHWYATLF SGFYIPFVFM LLALIIRGVS FKFRAKIDNH KWKGFWDWGM 120
  121 FLGSLLPPIL WGVAIANFMV GIPIDETKNA VGGFLQLLHP FALLGGVMFL LLCIVHGLQF 180
  181 LTIRTTGKLR ERARIAALKI APLAIIALLI FAGVGLWKTD IFTGHGKEWI MVPIGAFVAL 240
  241 CASTLLNKRR RDGWAFFMTS LTIILLSASV FAGMFPRVLI SSLGSIYDLT IYNAASGDYA 300
  301 LKLMTYFSIA ILPFVLGSQI WSFYVFRQPV KSDKDLEY