YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256594, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	27	0.93
Non-Cytoplasmic	28	32	0.73
Transmembrane Helix	33	54	0.85
Cytoplasmic	55	59	0.58
Transmembrane Helix	60	79	0.90
Non-Cytoplasmic	80	85	0.68
Transmembrane Helix	86	109	0.89
Cytoplasmic	110	117	0.66
Transmembrane Helix	118	138	0.87
Non-Cytoplasmic	139	158	0.76
Transmembrane Helix	159	180	0.93
Cytoplasmic	181	209	0.73
Transmembrane Helix	210	231	0.91
Non-Cytoplasmic	232	246	0.67
Transmembrane Helix	247	269	0.91
Cytoplasmic	270	288	0.65
Transmembrane Helix	289	309	0.89
Non-Cytoplasmic	310	333	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSTSNRIK VYFGVCMLIC LSVFPFVNDS RSLLILFTQI FIFAIFAMSF DVLLGYTGIV  60
   61 SFGHCMFFGI GAYGVALLFD RQGVSITNFF IGIVAAIIIS AIVSYIIGLL SLRLKSHFYA 120
  121 MLTLAISQLF FVLAEKWRGL THGGDGFTFG VPDVFRDRFT LYYVTLICLL IIFVLLRLFT 180
  181 KSSIGKVLKA ISQNEQRVEA LGYKVLHYKI IASVVAGVVA AISGGLFVIT LRFVNTTVFS 240
  241 IEMTLNALLM TMIGGVGTLI GAIAGAGIIE SLKYYLSELA TEYPIFERWT IILGLLYIIV 300
  301 LLVFPKGLVG TVKGLKNMKR NKKEKRAEVE QNV