YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21399812, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLINLFVN GISTGMLIFL LASGLSLIFG LMSVLNFAHG GLFAWGAFTG VWLFNMTGSY  60
   61 VLALIGAIAM GMFLGFILER FLIRPVYGNH VRQLLVTLGG MLVLSECIKV FWGPNPIGAK 120
  121 LPLWLQGSFT FGGVILIKYR LFVILIGIII YVALLLLLKK TKIGLMIRAG VMDKEMVQAL 180
  181 GINVKAIFSF VFLLGAGMAA LGGFLLAPYS GVIFAEMGMQ YAILAFIVVI IGGLGSVQGS 240
  241 AIASLIVGLA GAFTAYFIPD LSLAINMLML LFFLIVKPNG LVGEKG

Type	Start	End	Confidence
Cytoplasmic	1	14	0.72
Transmembrane Helix	15	39	0.83
Non-Cytoplasmic	40	55	0.74
Transmembrane Helix	56	78	0.87
Cytoplasmic	79	93	0.78
Transmembrane Helix	94	113	0.94
Non-Cytoplasmic	114	135	0.90
Transmembrane Helix	136	158	0.93
Cytoplasmic	159	185	0.86
Transmembrane Helix	186	207	0.88
Non-Cytoplasmic	208	220	0.70
Transmembrane Helix	221	247	0.81
Cytoplasmic	248	252	0.52
Transmembrane Helix	253	276	0.81
Non-Cytoplasmic	277	286	0.77