YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261941, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	34	0.85
Transmembrane Helix	35	53	0.95
Cytoplasmic	54	64	0.84
Transmembrane Helix	65	86	0.89
Non-Cytoplasmic	87	93	0.76
Transmembrane Helix	94	114	0.95
Cytoplasmic	115	122	0.89
Transmembrane Helix	123	147	0.86
Non-Cytoplasmic	148	153	0.79
Transmembrane Helix	154	174	0.93
Cytoplasmic	175	193	0.89
Transmembrane Helix	194	215	0.94
Non-Cytoplasmic	216	226	0.79
Transmembrane Helix	227	246	0.95
Cytoplasmic	247	260	0.85
Transmembrane Helix	261	283	0.86
Non-Cytoplasmic	284	288	0.85
Transmembrane Helix	289	313	0.90
Cytoplasmic	314	321	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIEKIQTF IILFAVTCGI ILGQFNVIHM YSDKFIVPFL FFMLYGLFLS IPLKEIKNGF  60
   61 RNLKFAGTSL TINFLWTPLL AWGLGALFLS DHPALWVGFI MLMVTPCTDW YLIFTEIAKG 120
  121 NVALSTAILP VNLILQVLLL PIYLFLFAGV MKTVAVSVLI ESIVIVIVLP FLLAHATKFI 180
  181 MNKLKKAETL ENKLIPFFSS AQIVFLSLAI VAMFASQGKY LLQNMNVVLL LLIPVLLFFI 240
  241 INFVLGQFIR RVMRLSYKDT VSLNLTTLAR NSPVALAIAV TAFPDEPLIA LALVIGPLIE 300
  301 LPVLACVSQV LLLIKKKRQY I