YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261923, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKPYKVMA LSALMAVFAA GNIMPAHTYA AESTVKQAPV HAVAKAYNDY EEYSLGPEGL  60
   61 KDAMERTGSN ALVMDLYALT IIKQGNVNFG NVSTVDAALK GKVIQHKDTA RGNAKQWLDV 120
  121 LKPQLISTNQ NIINYNTKFQ NYYDTLVAAV DAKDKAILTK GLTRLSSSIN ENKAQVDQLV 180
  181 EDLKKFRNKM TSDTQNFKGD ANQITSILAS QDAGIPLLQN QITTYNEAIS KYNAIIIGSS 240
  241 VATALGPIAI IGGAVVIATG AGTPLGVALI AGGAAAVGGG TAGIVLAKKE LDNAQAEIQK 300
  301 ITGQITTAQL EVAGLTNIKT QTEYLTNTID TAITALQNIS NQWYTMGSKY NSLLQNVDSI 360
  361 SPNDLVFIKE DLNIAKDSWK NIKDYAEKIY AEDIKVVDTK KA

Type	Start	End	Confidence
Signal Peptide	1	30	0.85
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	233	0.95
Transmembrane Helix	234	258	0.69
Cytoplasmic	259	264	0.48
Transmembrane Helix	265	287	0.70
Non-Cytoplasmic	288	402	0.71