YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261844, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMIKKILRV TSIIIAIFAF ILICMHIDVT LGRKMEAGKN MPTEYAPHYS DFQLYVEGKS  60
   61 FYKQLFTDIK EAKQSIYTYF FILSDDKSSH TFLNLLKEKA KEGVNVYLSV DLLNDLSFER 120
  121 KMKKELQENG VHFTYSRKQE LPFGFYSLHH RNHRRITTID GEIGYTGGFN IGDEYLGKDK 180
  181 HFGYWRDYHV RIKGEGAKDL EEQFALDWKR DTKEDIKRST DKASKGNTLH TMVSYNGHHV 240
  241 AEKYIDLIKQ ARHSIVIATP YFIAKNKESM NALIAAQKRG VTVKILWSYK PDLPLIKEAA 300
  301 YPYIRQAINN GITVYGYKKG MFHGKLMLID NELTVIGTTN FTSRSFNIND EMNFYIHGGP 360
  361 IVGQVNKALT EDFRDSKEMT KEFFEKLSFW ERCKEKFAGM VDFYL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	29	0.83
Non-Cytoplasmic	30	405	0.96