YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256000, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMELWAATF FAFCRITSFL YFLPFFSGRS IPAMAKVTFG LALSITVADQ VDVSHIKTVW  60
   61 DVAAYAGTQI VIGLSLSKIV EMLWNIPKMA GHILDFDIGL SQASLFDVNA GSQSTLLSTI 120
  121 FDIFFLIIFI SLGGINYFVA TILKSFQYTE AISKLLTTSF LDSLLATLLF AITSAVEIAL 180
  181 PLMGSLFIIN FVLILIAKNA PQLNVFMNAY VIKITCGILF IAMSVPMLGY VFKNMTDVLL 240
  241 EEYTKLFNFF LTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.46
Transmembrane Helix	6	26	0.86
Cytoplasmic	27	61	0.35
Transmembrane Helix	62	80	0.58
Non-Cytoplasmic	81	119	0.56
Transmembrane Helix	120	140	0.92
Cytoplasmic	141	151	0.64
Transmembrane Helix	152	173	0.74
Non-Cytoplasmic	174	177	0.58
Transmembrane Helix	178	197	0.87
Cytoplasmic	198	208	0.70
Transmembrane Helix	209	230	0.92
Non-Cytoplasmic	231	253	0.81