YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261770, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIKKQLSLL AVIFVFSIVF SIIFVNPAYA AQNGFINFEN GKEFTSNSSV QLFALVTLLS  60
   61 LSSSIVLLFT HFTYFMIVLG ITRQGLGVMN LPPNQVLVGL ALFLSLFTMQ PVLGQLKSDV 120
  121 WDPMTKEKIT VSQAAETTAP IMKEYMSKHT YKHDLKMMLK VRGEELPKDL KDLSLFTLVP 180
  181 SFTLTQIQKG LLTGMFIYLA FVFIDLIIST LLMYLGMMMV PPMILSLPFK ILIFVYLGGY 240
  241 TKIVDIMFKT VA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	31	0.90
Non-Cytoplasmic	32	51	0.94
Transmembrane Helix	52	75	0.89
Cytoplasmic	76	95	0.74
Transmembrane Helix	96	114	0.67
Non-Cytoplasmic	115	190	0.71
Transmembrane Helix	191	216	0.81
Cytoplasmic	217	223	0.48
Transmembrane Helix	224	244	0.70
Non-Cytoplasmic	245	252	0.50