YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255205, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.52
Transmembrane Helix	5	21	0.93
Cytoplasmic	22	28	0.48
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	56	0.52
Transmembrane Helix	57	80	0.90
Cytoplasmic	81	100	0.58
Transmembrane Helix	101	133	0.75
Non-Cytoplasmic	134	141	0.50
Transmembrane Helix	142	165	0.88
Cytoplasmic	166	175	0.44
Transmembrane Helix	176	201	0.77
Non-Cytoplasmic	202	222	0.50
Transmembrane Helix	223	253	0.78
Cytoplasmic	254	273	0.95
Transmembrane Helix	274	297	0.86
Non-Cytoplasmic	298	319	0.92
Transmembrane Helix	320	340	0.90
Cytoplasmic	341	355	0.84
Transmembrane Helix	356	378	0.85
Non-Cytoplasmic	379	389	0.80
Transmembrane Helix	390	414	0.84
Cytoplasmic	415	475	0.89
Transmembrane Helix	476	497	0.92
Non-Cytoplasmic	498	499	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILLALIPI MMIFICLFLF KQTSLRSSLI SYAVCVGIVL LSPTFQLGIS ETVHATIKGW  60
   61 LICFIVGYVL FFGIFLFHLM NKRGYIDQVA RFLEEVTHDR LLQMLLMCFG ICPLIESVSG 120
  121 FGIGFMVAAP IFLSLDYKPF QAVLLSFIGL LASSWGAMAT GTIIGSQLIN MPLTTLGTNT 180
  181 ALLSIPMFAY FVILSLHVVG GWQAVIEKWK EGFGFFLLFS LGIYLSNAYV SVELAGILSS 240
  241 IVTITFGFLI IKVKGKSGQN LMTEHAAATE REVSIIKIIS PYIFLTVCIL LSRLVPALHD 300
  301 VFRSYAVLDL KSYSYKLEML YSPGFWLGMT CLFTIIFFRI PSHIMKQSLL QTIKQWIPFA 360
  361 ITTTMFIAIS ELMGASGMHS LLAKTAGDTF GTFFVFVAPF IGGIGGFLTG SNAGSNAMFI 420
  421 KLQMQTAQNV ALPWQYVTTL QNTASSVATI ACPSRITLGA YLCNILYREN ELLKKTTLMI 480
  481 FGAVLLIVVE VIFWYMLRN