YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261087, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYIPNMITI ANFVCGLLAI HAVFVHDMYG AVMFIITGMV FDLFDGMVAR KLDSVSEIGG  60
   61 ELDSFADLVT FGVAPSILAY SVALKDLQSI GMLCALAYSV CGMLRLARFN TQQSKLPTFI 120
  121 GMPIPFAAIC LLILCLLNNP VSVAFGTCIL AYLMVSKIKF PHFKKDISES LKSERWD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	25	0.87
Non-Cytoplasmic	26	29	0.57
Transmembrane Helix	30	49	0.65
Cytoplasmic	50	63	0.54
Transmembrane Helix	64	83	0.65
Non-Cytoplasmic	84	88	0.63
Transmembrane Helix	89	107	0.90
Cytoplasmic	108	115	0.77
Transmembrane Helix	116	137	0.85
Non-Cytoplasmic	138	140	0.73
Transmembrane Helix	141	160	0.77
Cytoplasmic	161	177	0.80